The Prefab Scale values are set to zero when the Prefab with a nested canvas is modified through a script

How to reproduce:
1. Open the “IN-52631_repro.zip“ project
2. Open the “TestScene“
3. In the Hierarchy select the RootCanvas->OwningPrefab->PrefabWithNestedCanvas
4. Right-click the “PrefabWithNestedCanvas“ GameObject and select IGT-> ManipulatePrefab
5. Observe the Scale of the “PrefabWithNestedCanvas“ GameObject in the Inspector window

Expected result: All Scale values are one
Actual result: All Scale values are zero

Reproducible with: 2021.3.30f1, 2022.3.8f1, 2023.1.11f1, 2023.2.0b7, 2023.3.0a3

Reproducible on: Windows 10
Not reproducible on: No other environment tested