Some Build Profile settings do not remain checked when launching a project without the /Library folder through the command line

How to reproduce:
1. Open the project “IN-118856_Test”
2. File → Build Profiles → select the “bprof” build profile
3. Observe that all the Platform Settings are checked
4. Close the project and delete the /Library folder
5. Open the command line in the project folder path and run the following command (make sure the Unity version path is correct):
"C:\Program Files\Unity\Hub\Editor\6000.0.62f1\Editor\Unity.exe" -activeBuildProfile Assets/Settings/Profiles/bprof.asset -projectPath .
6. File → Build Profiles → select the “bprof” build profile
7. Observe the Platform Settings

Expected result: All Platform Settings are checked
Actual result: The “Copy PDB files”, “Create Visual Studio Solution”, “Wait For Managed Debugger” Platform Settings are unchecked

Reproducible with: 6000.0.0b16, 6000.0.62f1, 6000.2.12f1, 6000.3.0b10, 6000.4.0a5, 6000.5.0a1
Could not test with: 6000.0.0b15 (ArgumentNullException error)

Reproducible on: Windows 11
Not reproducible on: No other environments tested